IL_1OND_150

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

1OND|1|0|A|1920, 1OND|1|0|A|1921, 1OND|1|0|U|1922, 1OND|1|0|U|1927, 1OND|1|0|U|1946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OND_150 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.4053

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

1OND|1|0|C|1917
1OND|1|0|G|1918
1OND|1|0|A|1919
1OND|1|0|A|1920
1OND|1|0|A|1921
1OND|1|0|U|1922
1OND|1|0|U|1923
1OND|1|0|C|1924
1OND|1|0|C|1925
1OND|1|0|U|1926
1OND|1|0|U|1927
1OND|1|0|G|1928
*
1OND|1|0|C|1944
1OND|1|0|C|1945
1OND|1|0|U|1946
1OND|1|0|G|1947

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains