IL_1OW9_005

3D structure

PDB id

1OW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR Structure of the Active Conformation of the VS Ribozyme Cleavage Site

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1OW9_005 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.2795

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

1OW9|5|A|C|4
1OW9|5|A|G|5
1OW9|5|A|A|6
1OW9|5|A|A|7
1OW9|5|A|G|8
*
1OW9|5|A|C|17
1OW9|5|A|G|18
1OW9|5|A|A|19
1OW9|5|A|G|20

Current chains

Chain A

A mimic of the VS Ribozyme Hairpin Substrate

Nearby chains