IL_1P5P_003

3D structure

PDB id

1P5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of HCV IRES Domain II (minimized average structure)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GUG

Length

5 nucleotides

Bulged bases

1P5P|1|A|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1P5P_003 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3835

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

1P5P|1|A|U|19
1P5P|1|A|C|20
*
1P5P|1|A|G|63
1P5P|1|A|U|64
1P5P|1|A|G|65

Current chains

Chain A

77-MER

Nearby chains