IL_1P5P_007

3D structure

PDB id

1P5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of HCV IRES Domain II (minimized average structure)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AGAAAG*UUAGUAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1P5P_007 not in the Motif Atlas

Geometric match to IL_4V9F_007

Geometric discrepancy: 0.1863

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

1P5P|1|A|A|28
1P5P|1|A|G|29
1P5P|1|A|A|30
1P5P|1|A|A|31
1P5P|1|A|A|32
1P5P|1|A|G|33
*
1P5P|1|A|U|49
1P5P|1|A|U|50
1P5P|1|A|A|51
1P5P|1|A|G|52
1P5P|1|A|U|53
1P5P|1|A|A|54
1P5P|1|A|U|55

Current chains

Chain A

77-MER

Nearby chains