IL_1Q7Y_006
3D structure
- PDB id
- 1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAACUG*CUCAGUAU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Q7Y_006 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.0544
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
1Q7Y|1|A|A|158
1Q7Y|1|A|G|159
1Q7Y|1|A|A|160
1Q7Y|1|A|A|161
1Q7Y|1|A|C|162
1Q7Y|1|A|U|163
1Q7Y|1|A|G|164
*
1Q7Y|1|A|C|171
1Q7Y|1|A|U|172
1Q7Y|1|A|C|173
1Q7Y|1|A|A|174
1Q7Y|1|A|G|175
1Q7Y|1|A|U|176
1Q7Y|1|A|A|177
1Q7Y|1|A|U|178
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain 4
- 50S ribosomal protein L44E
- Chain M
- 50S ribosomal protein L15P
- Chain N
- L15 Ribosomal Protein
Coloring options: