IL_1Q7Y_009

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1Q7Y|1|A|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0756

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1Q7Y|1|A|A|248
1Q7Y|1|A|G|249
*
1Q7Y|1|A|C|260
1Q7Y|1|A|A|261
1Q7Y|1|A|A|262
1Q7Y|1|A|U|263
1Q7Y|1|A|G|264
1Q7Y|1|A|U|265

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain H

50S ribosomal protein L7Ae

Chain N

L15 Ribosomal Protein