IL_1Q7Y_088

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1Q7Y|1|A|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q7Y_088 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.1751

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

1Q7Y|1|A|C|2626
1Q7Y|1|A|G|2627
*
1Q7Y|1|A|C|2636
1Q7Y|1|A|A|2637
1Q7Y|1|A|G|2638

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

CCdA-P-Puromycin

Chain C

50S ribosomal protein L2P