IL_1Q81_002

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

1Q81|1|A|A|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_002 not in the Motif Atlas

Homologous match to IL_4V9F_002

Geometric discrepancy: 0.0649

The information below is about IL_4V9F_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

1Q81|1|A|G|33
1Q81|1|A|C|34
*
1Q81|1|A|G|448
1Q81|1|A|A|449
1Q81|1|A|C|450

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P