IL_1Q81_009

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1Q81|1|A|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0596

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1Q81|1|A|A|248
1Q81|1|A|G|249
*
1Q81|1|A|C|260
1Q81|1|A|A|261
1Q81|1|A|A|262
1Q81|1|A|U|263
1Q81|1|A|G|264
1Q81|1|A|U|265

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain H

50S ribosomal protein L7Ae

Chain N

L15 Ribosomal Protein