IL_1Q81_017

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GU*AAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_017 not in the Motif Atlas

Homologous match to IL_4V9F_016

Geometric discrepancy: 0.0914

The information below is about IL_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

1Q81|1|A|G|554
1Q81|1|A|U|555
*
1Q81|1|A|A|602
1Q81|1|A|A|603
1Q81|1|A|G|604
1Q81|1|A|C|605

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain Z

50S ribosomal protein L32E