IL_1Q81_077

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

1Q81|1|A|A|2291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_077 not in the Motif Atlas

Homologous match to IL_4V9F_079

Geometric discrepancy: 0.2291

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1Q81|1|A|G|2279
1Q81|1|A|A|2280
*
1Q81|1|A|U|2290
1Q81|1|A|A|2291
1Q81|1|A|C|2292

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain J

L10 Ribosomal Protein

Chain R

50S ribosomal protein L21e