IL_1Q81_087
3D structure
- PDB id
- 1Q81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UG*CAAG
- Length
- 6 nucleotides
- Bulged bases
- 1Q81|1|A|A|2577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Q81_087 not in the Motif Atlas
- Homologous match to IL_4V9F_089
- Geometric discrepancy: 0.0603
- The information below is about IL_4V9F_089
- Detailed Annotation
- Major groove platform with intercalation
- Broad Annotation
- Major groove platform
- Motif group
- IL_02555.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
1Q81|1|A|U|2557
1Q81|1|A|G|2558
*
1Q81|1|A|C|2575
1Q81|1|A|A|2576
1Q81|1|A|A|2577
1Q81|1|A|G|2578
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
No other chains within 10ÅColoring options: