3D structure

PDB id
1Q81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UG*CAAG
Length
6 nucleotides
Bulged bases
1Q81|1|A|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1Q81_087 not in the Motif Atlas
Homologous match to IL_4V9F_089
Geometric discrepancy: 0.0603
The information below is about IL_4V9F_089
Detailed Annotation
Major groove platform with intercalation
Broad Annotation
Major groove platform
Motif group
IL_02555.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
9

Unit IDs

1Q81|1|A|U|2557
1Q81|1|A|G|2558
*
1Q81|1|A|C|2575
1Q81|1|A|A|2576
1Q81|1|A|A|2577
1Q81|1|A|G|2578

Current chains

Chain A
23S ribosomal rna

Nearby chains

No other chains within 10Å

Coloring options:


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