IL_1Q81_093

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UU*ACGUG

Length

7 nucleotides

Bulged bases

1Q81|1|A|U|2749

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q81_093 not in the Motif Atlas

Homologous match to IL_4V9F_095

Geometric discrepancy: 0.0597

The information below is about IL_4V9F_095

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_07171.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

1Q81|1|A|U|2732
1Q81|1|A|U|2733
*
1Q81|1|A|A|2746
1Q81|1|A|C|2747
1Q81|1|A|G|2748
1Q81|1|A|U|2749
1Q81|1|A|G|2750

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain Q

50S ribosomal protein L19E

Chain Y

50S ribosomal protein L31e