IL_1Q82_008

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q82_008 not in the Motif Atlas

Homologous match to IL_4V9F_008

Geometric discrepancy: 0.0477

The information below is about IL_4V9F_008

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

1Q82|1|A|C|245
1Q82|1|A|G|246
1Q82|1|A|A|247
1Q82|1|A|A|248
*
1Q82|1|A|U|265
1Q82|1|A|G|266

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain H

50S ribosomal protein L7Ae

Chain N

L15 Ribosomal Protein