IL_1Q82_022

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

CAUG*CG

Length

6 nucleotides

Bulged bases

1Q82|1|A|A|700, 1Q82|1|A|U|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q82_022 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.0489

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

1Q82|1|A|C|699
1Q82|1|A|A|700
1Q82|1|A|U|701
1Q82|1|A|G|702
*
1Q82|1|A|C|726
1Q82|1|A|G|727

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain M

50S ribosomal protein L15P

Chain P

50S ribosomal protein L18e