IL_1Q82_042

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

UGG*CG

Length

5 nucleotides

Bulged bases

1Q82|1|A|G|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q82_042 not in the Motif Atlas

Homologous match to IL_4V9F_041

Geometric discrepancy: 0.046

The information below is about IL_4V9F_041

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

1Q82|1|A|U|1136
1Q82|1|A|G|1137
1Q82|1|A|G|1138
*
1Q82|1|A|C|1225
1Q82|1|A|G|1226

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

50S ribosomal protein L6P

Chain J

L10 Ribosomal Protein