IL_1Q82_070

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q82_070 not in the Motif Atlas

Homologous match to IL_4V9F_070

Geometric discrepancy: 0.0553

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

1Q82|1|A|G|1974
1Q82|1|A|C|1975
*
1Q82|1|A|G|2005
1Q82|1|A|C|2006
1Q82|1|A|A|2007
1Q82|1|A|U|2008

Current chains

Chain A

23S ribosomal rna

Nearby chains