IL_1Q86_010

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

1Q86|1|A|G|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_010 not in the Motif Atlas

Homologous match to IL_4V9F_010

Geometric discrepancy: 0.0527

The information below is about IL_4V9F_010

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

1Q86|1|A|G|274
1Q86|1|A|G|275
*
1Q86|1|A|U|374
1Q86|1|A|G|375
1Q86|1|A|C|376

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain H

50S ribosomal protein L7Ae

Chain N

L15 Ribosomal Protein