IL_1Q86_012
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGC*GACG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Q86_012 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2095
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
1Q86|1|A|C|287
1Q86|1|A|A|288
1Q86|1|A|G|289
1Q86|1|A|C|290
*
1Q86|1|A|G|362
1Q86|1|A|A|363
1Q86|1|A|C|364
1Q86|1|A|G|365
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain N
- L15 Ribosomal Protein
Coloring options: