3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAGC*GACG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1Q86_012 not in the Motif Atlas
Geometric match to IL_6CZR_168
Geometric discrepancy: 0.2095
The information below is about IL_6CZR_168
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67743.1
Basepair signature
cWW-cWW-cWH-cWW
Number of instances in this motif group
9

Unit IDs

1Q86|1|A|C|287
1Q86|1|A|A|288
1Q86|1|A|G|289
1Q86|1|A|C|290
*
1Q86|1|A|G|362
1Q86|1|A|A|363
1Q86|1|A|C|364
1Q86|1|A|G|365

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain N
L15 Ribosomal Protein

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.213 s