IL_1Q86_021

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_021 not in the Motif Atlas

Homologous match to IL_4V9F_020

Geometric discrepancy: 0.0451

The information below is about IL_4V9F_020

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

1Q86|1|A|C|663
1Q86|1|A|U|664
1Q86|1|A|A|665
1Q86|1|A|A|666
1Q86|1|A|C|667
*
1Q86|1|A|G|679
1Q86|1|A|G|680
1Q86|1|A|G|681
1Q86|1|A|A|682
1Q86|1|A|G|683

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain M

50S ribosomal protein L15P