IL_1Q86_050
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1Q86_050 not in the Motif Atlas
- Homologous match to IL_4V9F_050
- Geometric discrepancy: 0.0379
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
1Q86|1|A|G|1416
1Q86|1|A|G|1417
1Q86|1|A|U|1418
1Q86|1|A|U|1419
*
1Q86|1|A|A|1678
1Q86|1|A|C|1679
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L39e
- Chain Q
- 50S ribosomal protein L19E
- Chain T
- 50S ribosomal protein L23P
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