IL_1Q86_056

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1Q86|1|A|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0536

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1Q86|1|A|C|1570
1Q86|1|A|G|1571
1Q86|1|A|A|1572
1Q86|1|A|A|1573
1Q86|1|A|C|1574
*
1Q86|1|A|G|1622
1Q86|1|A|C|1623
1Q86|1|A|A|1624
1Q86|1|A|U|1625
1Q86|1|A|A|1626
1Q86|1|A|G|1627

Current chains

Chain A

23S ribosomal rna

Nearby chains