IL_1Q86_061

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_061 not in the Motif Atlas

Homologous match to IL_4V9F_061

Geometric discrepancy: 0.0576

The information below is about IL_4V9F_061

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

1Q86|1|A|G|1744
1Q86|1|A|G|1745
1Q86|1|A|A|1746
1Q86|1|A|A|1747
*
1Q86|1|A|U|2034
1Q86|1|A|C|2035

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain D

50S ribosomal protein L3P

Chain L

50S ribosomal protein L14P