IL_1Q86_063

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUACC*GAAGAAG

Length

13 nucleotides

Bulged bases

1Q86|1|A|G|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0423

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

1Q86|1|A|C|1764
1Q86|1|A|G|1765
1Q86|1|A|U|1766
1Q86|1|A|A|1767
1Q86|1|A|C|1768
1Q86|1|A|C|1769
*
1Q86|1|A|G|1774
1Q86|1|A|A|1775
1Q86|1|A|A|1776
1Q86|1|A|G|1777
1Q86|1|A|A|1778
1Q86|1|A|A|1779
1Q86|1|A|G|1780

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 1

L37Ae 50S ribosomal protein

Chain Q

50S ribosomal protein L19E