3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CAG*CGGG
Length
7 nucleotides
Bulged bases
1Q86|1|A|G|2271
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1Q86_076 not in the Motif Atlas
Homologous match to IL_4V9F_076
Geometric discrepancy: 0.0567
The information below is about IL_4V9F_076
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

1Q86|1|A|C|2122
1Q86|1|A|A|2123
1Q86|1|A|G|2124
*
1Q86|1|A|C|2269
1Q86|1|A|G|2270
1Q86|1|A|G|2271
1Q86|1|A|G|2272

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain 4
50S ribosomal protein L44E
Chain C
50S ribosomal protein L2P
Chain N
L15 Ribosomal Protein

Coloring options:


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