IL_1Q86_085

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GUGAG

Length

8 nucleotides

Bulged bases

1Q86|1|A|G|2611, 1Q86|1|A|A|2612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_085 not in the Motif Atlas

Geometric match to IL_4V9F_087

Geometric discrepancy: 0.0508

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

1Q86|1|A|U|2545
1Q86|1|A|U|2546
1Q86|1|A|C|2547
*
1Q86|1|A|G|2609
1Q86|1|A|U|2610
1Q86|1|A|G|2611
1Q86|1|A|A|2612
1Q86|1|A|G|2613

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain D

50S ribosomal protein L3P

Chain L

50S ribosomal protein L14P