IL_1Q86_088

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

1Q86|1|A|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1Q86_088 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.2489

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

1Q86|1|A|C|2626
1Q86|1|A|G|2627
*
1Q86|1|A|C|2636
1Q86|1|A|A|2637
1Q86|1|A|G|2638

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

CCA-phenylalanine-cariotic-acid-biotin

Chain 6

CCA-phenylalanine-cariotic-acid-biotin

Chain C

50S ribosomal protein L2P