IL_1QBP_001

3D structure

PDB id

1QBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

G(CBV)(CBV)A*UGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QBP_001 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1466

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1QBP|1|A|G|2
1QBP|1|A|CBV|3
1QBP|1|A|CBV|4
1QBP|1|A|A|5
*
1QBP|1|B|U|27
1QBP|1|B|G|28
1QBP|1|B|G|29
1QBP|1|B|C|30

Current chains

Chain A

5'-R(*UP*GP*(CBV)P*(CBV)P*AP*GP*UP*UP*CP*GP*CP*UP*GP*GP*C)-3'

Chain B

5'-R(*UP*GP*(CBV)P*(CBV)P*AP*GP*UP*UP*CP*GP*CP*UP*GP*GP*C)-3'

Nearby chains