3D structure

PDB id
1QVF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAGUAA*UGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1QVF_007 not in the Motif Atlas
Homologous match to IL_4V9F_007
Geometric discrepancy: 0.0348
The information below is about IL_4V9F_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

1QVF|1|0|U|210
1QVF|1|0|U|211
1QVF|1|0|A|212
1QVF|1|0|G|213
1QVF|1|0|U|214
1QVF|1|0|A|215
1QVF|1|0|A|216
*
1QVF|1|0|U|224
1QVF|1|0|G|225
1QVF|1|0|A|226
1QVF|1|0|A|227
1QVF|1|0|C|228
1QVF|1|0|G|229

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 2
50S ribosomal protein L44E
Chain K
50S ribosomal protein L15P
Chain L
L15 Ribosomal Protein

Coloring options:


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