IL_1QVF_009

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1QVF|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0344

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

1QVF|1|0|A|248
1QVF|1|0|G|249
*
1QVF|1|0|C|260
1QVF|1|0|A|261
1QVF|1|0|A|262
1QVF|1|0|U|263
1QVF|1|0|G|264
1QVF|1|0|U|265

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain L

L15 Ribosomal Protein