IL_1QVF_011

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUCUCAUC*GUGCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_011 not in the Motif Atlas

Homologous match to IL_4V9F_011

Geometric discrepancy: 0.4116

The information below is about IL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

1QVF|1|0|C|280
1QVF|1|0|U|281
1QVF|1|0|C|282
1QVF|1|0|U|283
1QVF|1|0|C|284
1QVF|1|0|A|285
1QVF|1|0|U|286
1QVF|1|0|C|287
*
1QVF|1|0|G|365
1QVF|1|0|U|366
1QVF|1|0|G|367
1QVF|1|0|C|368
1QVF|1|0|G|369

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain L

L15 Ribosomal Protein