IL_1QVF_028

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_028 not in the Motif Atlas

Homologous match to IL_4V9F_027

Geometric discrepancy: 0.0364

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

1QVF|1|0|U|794
1QVF|1|0|G|795
1QVF|1|0|A|796
1QVF|1|0|A|797
1QVF|1|0|G|798
*
1QVF|1|0|U|815
1QVF|1|0|G|816
1QVF|1|0|G|817
1QVF|1|0|A|818
1QVF|1|0|A|819

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain O

50S ribosomal protein L19E

Chain Y

L37Ae 50S ribosomal protein