IL_1QVF_037

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_037 not in the Motif Atlas

Homologous match to IL_4V9F_036

Geometric discrepancy: 0.0421

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|A|965
1QVF|1|0|U|966
1QVF|1|0|U|967
1QVF|1|0|G|968
*
1QVF|1|0|C|1000
1QVF|1|0|U|1001
1QVF|1|0|G|1002
1QVF|1|0|U|1003

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain H

L10 Ribosomal Protein