IL_1QVF_055

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_055 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0317

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1QVF|1|0|G|1542
1QVF|1|0|G|1543
1QVF|1|0|U|1544
1QVF|1|0|C|1545
1QVF|1|0|G|1546
*
1QVF|1|0|U|1639
1QVF|1|0|C|1640
1QVF|1|0|A|1641
1QVF|1|0|A|1642
1QVF|1|0|C|1643

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E