IL_1QVF_056

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1QVF|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0467

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1QVF|1|0|C|1570
1QVF|1|0|G|1571
1QVF|1|0|A|1572
1QVF|1|0|A|1573
1QVF|1|0|C|1574
*
1QVF|1|0|G|1622
1QVF|1|0|C|1623
1QVF|1|0|A|1624
1QVF|1|0|U|1625
1QVF|1|0|A|1626
1QVF|1|0|G|1627

Current chains

Chain 0

23S ribosomal rna

Nearby chains