IL_1QVF_069

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.0945

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1QVF|1|0|U|1907
1QVF|1|0|G|1908
1QVF|1|0|A|1909
1QVF|1|0|A|1910
1QVF|1|0|C|1911
1QVF|1|0|A|1912
1QVF|1|0|C|1913
*
1QVF|1|0|G|1926
1QVF|1|0|A|1927
1QVF|1|0|C|1928
1QVF|1|0|G|1929
1QVF|1|0|A|1930
1QVF|1|0|A|1931
1QVF|1|0|G|1932

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L44E

Chain 3

Deacylated tRNA minihelix

Chain A

50S ribosomal protein L2P