IL_1QVF_092

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

1QVF|1|0|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_092 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.031

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1QVF|1|0|U|2724
1QVF|1|0|G|2725
1QVF|1|0|U|2726
1QVF|1|0|A|2727
1QVF|1|0|C|2728
*
1QVF|1|0|G|2754
1QVF|1|0|G|2755
1QVF|1|0|U|2756
1QVF|1|0|A|2757
1QVF|1|0|G|2758

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain T

50S ribosomal protein L24E

Chain W

50S ribosomal protein L31e