IL_1QVF_103

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUAC*GGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVF_103 not in the Motif Atlas

Homologous match to IL_4V9F_106

Geometric discrepancy: 0.0287

The information below is about IL_4V9F_106

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

1QVF|1|9|G|3075
1QVF|1|9|G|3076
1QVF|1|9|A|3077
1QVF|1|9|G|3078
1QVF|1|9|U|3079
1QVF|1|9|A|3080
1QVF|1|9|C|3081
*
1QVF|1|9|G|3101
1QVF|1|9|G|3102
1QVF|1|9|A|3103
1QVF|1|9|A|3104
1QVF|1|9|A|3105
1QVF|1|9|C|3106

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain H

L10 Ribosomal Protein

Chain V

50S ribosomal protein L30P