IL_1QVG_015
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUACC*GAGGCGAAAUAGAGC
- Length
- 20 nucleotides
- Bulged bases
- 1QVG|1|0|U|510, 1QVG|1|0|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_015 not in the Motif Atlas
- Geometric match to IL_4V9F_014
- Geometric discrepancy: 0.0342
- The information below is about IL_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31504.1
- Basepair signature
- cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
1QVG|1|0|G|487
1QVG|1|0|U|488
1QVG|1|0|A|489
1QVG|1|0|C|490
1QVG|1|0|C|491
*
1QVG|1|0|G|501
1QVG|1|0|A|502
1QVG|1|0|G|503
1QVG|1|0|G|504
1QVG|1|0|C|505
1QVG|1|0|G|506
1QVG|1|0|A|507
1QVG|1|0|A|508
1QVG|1|0|A|509
1QVG|1|0|U|510
1QVG|1|0|A|511
1QVG|1|0|G|512
1QVG|1|0|A|513
1QVG|1|0|G|514
1QVG|1|0|C|515
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L39e
- Chain Q
- 50S ribosomal protein L22P
- Chain S
- 50S ribosomal protein L24P
Coloring options: