IL_1QVG_018

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCG*CACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_018 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2016

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

1QVG|1|0|C|558
1QVG|1|0|U|559
1QVG|1|0|C|560
1QVG|1|0|G|561
*
1QVG|1|0|C|596
1QVG|1|0|A|597
1QVG|1|0|C|598
1QVG|1|0|G|599

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain X

50S ribosomal protein L32E