IL_1QVG_040
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 1QVG|1|0|U|1109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_040 not in the Motif Atlas
- Homologous match to IL_4V9F_039
- Geometric discrepancy: 0.0493
- The information below is about IL_4V9F_039
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
1QVG|1|0|G|1108
1QVG|1|0|U|1109
1QVG|1|0|G|1110
*
1QVG|1|0|C|1253
1QVG|1|0|C|1254
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain I
- 50S ribosomal protein L13P
- Chain V
- 50S ribosomal protein L30P
Coloring options: