IL_1QVG_069

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.0971

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

1QVG|1|0|U|1907
1QVG|1|0|G|1908
1QVG|1|0|A|1909
1QVG|1|0|A|1910
1QVG|1|0|C|1911
1QVG|1|0|A|1912
1QVG|1|0|C|1913
*
1QVG|1|0|G|1926
1QVG|1|0|A|1927
1QVG|1|0|C|1928
1QVG|1|0|G|1929
1QVG|1|0|A|1930
1QVG|1|0|A|1931
1QVG|1|0|G|1932

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P