IL_1QVG_086

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

1QVG|1|0|U|2607, 1QVG|1|0|C|2608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_086 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.0491

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

1QVG|1|0|C|2547
1QVG|1|0|C|2548
*
1QVG|1|0|G|2606
1QVG|1|0|U|2607
1QVG|1|0|C|2608
1QVG|1|0|G|2609

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 5

Oligonucleotide CCA

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P