IL_1QVG_092
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 1QVG|1|0|U|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1QVG_092 not in the Motif Atlas
- Homologous match to IL_4V9F_094
- Geometric discrepancy: 0.0439
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
1QVG|1|0|U|2724
1QVG|1|0|G|2725
1QVG|1|0|U|2726
1QVG|1|0|A|2727
1QVG|1|0|C|2728
*
1QVG|1|0|G|2754
1QVG|1|0|G|2755
1QVG|1|0|U|2756
1QVG|1|0|A|2757
1QVG|1|0|G|2758
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain T
- 50S ribosomal protein L24E
- Chain W
- 50S ribosomal protein L31e
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