IL_1QVG_098

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1QVG_098 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.0452

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1QVG|1|0|C|2873
1QVG|1|0|G|2874
1QVG|1|0|A|2875
1QVG|1|0|G|2876
*
1QVG|1|0|C|2881
1QVG|1|0|G|2882
1QVG|1|0|A|2883
1QVG|1|0|G|2884

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E