IL_1QVG_100

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUUGCCU*AUAAGC

Length

14 nucleotides

Bulged bases

1QVG|1|9|U|3023, 1QVG|1|9|G|3025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVG|1|9|G|3021
1QVG|1|9|G|3022
1QVG|1|9|U|3023
1QVG|1|9|U|3024
1QVG|1|9|G|3025
1QVG|1|9|C|3026
1QVG|1|9|C|3027
1QVG|1|9|U|3028
*
1QVG|1|9|A|3054
1QVG|1|9|U|3055
1QVG|1|9|A|3056
1QVG|1|9|A|3057
1QVG|1|9|G|3058
1QVG|1|9|C|3059

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5P

Chain M

50S ribosomal protein L18P