3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
1QVG|1|9|U|3087
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1QVG_104 not in the Motif Atlas
Homologous match to IL_4V9F_107
Geometric discrepancy: 0.0503
The information below is about IL_4V9F_107
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

1QVG|1|9|G|3086
1QVG|1|9|U|3087
1QVG|1|9|G|3088
*
1QVG|1|9|C|3095
1QVG|1|9|C|3096

Current chains

Chain 9
5S ribosomal RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain H
L10 Ribosomal Protein
Chain V
50S ribosomal protein L30P

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1288 s