IL_1R7W_012

3D structure

PDB id

1R7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGA,UCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1R7W_012 not in the Motif Atlas

Geometric match to IL_4P3U_012

Geometric discrepancy: 0.2367

The information below is about IL_4P3U_012

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

1R7W|10|A|G|1
1R7W|10|A|G|2
1R7W|10|A|A|3
*
1R7W|10|A|U|32
1R7W|10|A|C|33
1R7W|10|A|C|34

Current chains

Chain A

34-MER

Nearby chains