IL_1RY1_008

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1RY1_008 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.0886

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

1RY1|1|M|C|52
1RY1|1|M|U|53
1RY1|1|M|G|54
*
1RY1|1|N|C|292
1RY1|1|N|C|293
1RY1|1|N|G|294

Current chains

Chain M

SRP RNA

Chain N

SRP RNA

Nearby chains

Chain C

SRP9

Chain D

SRP14

Chain E

SRP Alu domain