IL_1S72_032

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGAG*CGUUUGACG

Length

14 nucleotides

Bulged bases

1S72|1|0|U|1029, 1S72|1|0|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.12

Basepair signature

cWW-cSS-tSS-L-tSH-tSS-tHS-tHW-cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

1S72|1|0|C|936
1S72|1|0|C|937
1S72|1|0|G|938
1S72|1|0|A|939
1S72|1|0|G|940
*
1S72|1|0|C|1026
1S72|1|0|G|1027
1S72|1|0|U|1028
1S72|1|0|U|1029
1S72|1|0|U|1030
1S72|1|0|G|1031
1S72|1|0|A|1032
1S72|1|0|C|1033
1S72|1|0|G|1034

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18e

Chain Q

50S ribosomal protein L21e

Chain W

50S ribosomal protein L30P